# selected_neighborhood_annotations

upf_id: UPF260_0002
query: M65|MAG15_contig48_gene_1046
sample: M65
mag: MAG15
neighbor_query: M65|MAG15_contig48_gene_1045
neighbor_status: known-like
neighbor_target: UniRef50_A0ABT7RZ79
neighbor_function: Uncharacterized protein
neighbor_target_header:
UniRef50_A0ABT7RZ79 Uncharacterized protein n=10 Tax=Lactobacillaceae TaxID=33958 RepID=A0ABT7RZ79_9LACO


upf_id: UPF260_0002
query: M65|MAG15_contig48_gene_1046
sample: M65
mag: MAG15
neighbor_query: M65|MAG15_contig48_gene_1047
neighbor_status: known-like
neighbor_target: UniRef50_A0ABT7RZ78
neighbor_function: SGNH/GDSL hydrolase family protein
neighbor_target_header:
UniRef50_A0ABT7RZ78 SGNH/GDSL hydrolase family protein n=1 Tax=Leuconostoc falkenbergense TaxID=2766470 RepID=A0ABT7RZ78_9LACO


upf_id: UPF260_0007
query: M65|MAG2_contig25_gene_356
sample: M65
mag: MAG2
neighbor_query: M65|MAG2_contig25_gene_354
neighbor_status: known-like
neighbor_target: UniRef50_A0A143YEB4
neighbor_function: Riboflavin biosynthesis protein
neighbor_target_header:
UniRef50_A0A143YEB4 Riboflavin biosynthesis protein n=34 Tax=Lactobacillales TaxID=186826 RepID=A0A143YEB4_9LACT


upf_id: UPF260_0006
query: M65|MAG49_contig227_gene_1196
sample: M65
mag: MAG49
neighbor_query: M65|MAG49_contig227_gene_1198
neighbor_status: known-like
neighbor_target: UniRef50_UPI0015C5E88F
neighbor_function: FAD-dependent oxidoreductase
neighbor_target_header:
UniRef50_UPI0015C5E88F FAD-dependent oxidoreductase n=1 Tax=Lactiplantibacillus plantarum TaxID=1590 RepID=UPI0015C5E88F


upf_id: UPF260_0236
query: M65|MAG49_contig341_gene_1999
sample: M65
mag: MAG49
neighbor_query: M65|MAG49_contig341_gene_2000
neighbor_status: known-like
neighbor_target: UniRef50_G2KUW3
neighbor_function: Tyr recombinase domain-containing protein
neighbor_target_header:
UniRef50_G2KUW3 Tyr recombinase domain-containing protein n=300 Tax=Bacteria TaxID=2 RepID=G2KUW3_FRUST


upf_id: UPF260_0077
query: M70|MAG20_contig45_gene_252
sample: M70
mag: MAG20
neighbor_query: M70|MAG20_contig45_gene_256
neighbor_status: known-like
neighbor_target: UniRef50_A0ABD7ZD19
neighbor_function: 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD
neighbor_target_header:
UniRef50_A0ABD7ZD19 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD n=19 Tax=Lacticaseibacillus TaxID=2759736 RepID=A0ABD7ZD19_LACZE


upf_id: UPF260_0010
query: M70|MAG30_contig459_gene_2352
sample: M70
mag: MAG30
neighbor_query: M70|MAG30_contig459_gene_2353
neighbor_status: known-like
neighbor_target: UniRef50_A0A2N7ATN6
neighbor_function: Transcriptional regulator
neighbor_target_header:
UniRef50_A0A2N7ATN6 Transcriptional regulator n=9 Tax=Lactobacillaceae TaxID=33958 RepID=A0A2N7ATN6_9LACO


upf_id: UPF260_0077
query: M70|MAG38_contig403_gene_2192
sample: M70
mag: MAG38
neighbor_query: M70|MAG38_contig403_gene_2195
neighbor_status: known-like
neighbor_target: UniRef50_Q039M3
neighbor_function: Phosphopantetheine adenylyltransferase
neighbor_target_header:
UniRef50_Q039M3 Phosphopantetheine adenylyltransferase n=48 Tax=Lactobacillales TaxID=186826 RepID=COAD_LACP3


upf_id: UPF260_0077
query: M70|MAG38_contig403_gene_2192
sample: M70
mag: MAG38
neighbor_query: M70|MAG38_contig403_gene_2196
neighbor_status: known-like
neighbor_target: UniRef50_A0A0R1X4B4
neighbor_function: 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD
neighbor_target_header:
UniRef50_A0A0R1X4B4 16S rRNA (Guanine(966)-N(2))-methyltransferase RsmD n=89 Tax=Bacillota TaxID=1239 RepID=A0A0R1X4B4_9LACO


upf_id: UPF260_0033
query: M70|MAG42_contig1035_gene_2787
sample: M70
mag: MAG42
neighbor_query: M70|MAG42_contig1035_gene_2788
neighbor_status: partial/remote-homology
neighbor_target: UniRef50_UPI000B9D7178
neighbor_function: hypothetical protein
neighbor_target_header:
UniRef50_UPI000B9D7178 hypothetical protein n=1 Tax=Latilactobacillus sakei TaxID=1599 RepID=UPI000B9D7178


upf_id: UPF260_0148
query: M75|MAG24_contig34_gene_214
sample: M75
mag: MAG24
neighbor_query: M75|MAG24_contig34_gene_213
neighbor_status: known-like
neighbor_target: UniRef50_A0ABX6C8T2
neighbor_function: Small ribosomal subunit biogenesis GTPase RsgA
neighbor_target_header:
UniRef50_A0ABX6C8T2 Small ribosomal subunit biogenesis GTPase RsgA n=17 Tax=Latilactobacillus TaxID=2767885 RepID=A0ABX6C8T2_9LACO


upf_id: UPF260_0170
query: M75|MAG51_contig352_gene_1523
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig352_gene_1518
neighbor_status: known-like
neighbor_target: UniRef50_A0A2U2N5E2
neighbor_function: Bacteriophage T5 Orf172 DNA-binding domain-containing protein
neighbor_target_header:
UniRef50_A0A2U2N5E2 Bacteriophage T5 Orf172 DNA-binding domain-containing protein n=2 Tax=Bifidobacterium TaxID=1678 RepID=A0A2U2N5E2_9BIFI


upf_id: UPF260_0180
query: M75|MAG51_contig352_gene_1545
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig352_gene_1542
neighbor_status: known-like
neighbor_target: UniRef50_UPI000A38C72C
neighbor_function: ThiF family adenylyltransferase
neighbor_target_header:
UniRef50_UPI000A38C72C ThiF family adenylyltransferase n=1 Tax=Enterococcus sp. 4E1_DIV0656 TaxID=1834180 RepID=UPI000A38C72C


upf_id: UPF260_0104
query: M75|MAG51_contig352_gene_1601
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig352_gene_1604
neighbor_status: known-like
neighbor_target: UniRef50_A0A1H0ZVJ0
neighbor_function: Putative transposase DNA-binding domain-containing protein
neighbor_target_header:
UniRef50_A0A1H0ZVJ0 Putative transposase DNA-binding domain-containing protein n=2 Tax=Crystallibacter TaxID=3456524 RepID=A0A1H0ZVJ0_9MICC


upf_id: UPF260_0229
query: M75|MAG51_contig678_gene_3051
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig678_gene_3049
neighbor_status: partial/remote-homology
neighbor_target: UniRef50_A0ABU8SLY2
neighbor_function: Single-stranded DNA-binding protein
neighbor_target_header:
UniRef50_A0ABU8SLY2 Single-stranded DNA-binding protein n=2 Tax=Nicoliella TaxID=2978367 RepID=A0ABU8SLY2_9LACO


upf_id: UPF260_0229
query: M75|MAG51_contig678_gene_3051
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig678_gene_3052
neighbor_status: known-like
neighbor_target: UniRef50_A0A0D0Y338
neighbor_function: Poly(Glycerol-phosphate) alpha-glucosyltransferase
neighbor_target_header:
UniRef50_A0A0D0Y338 Poly(Glycerol-phosphate) alpha-glucosyltransferase n=1 Tax=Paucilactobacillus wasatchensis TaxID=1335616 RepID=A0A0D0Y338_9LACO


upf_id: UPF260_0229
query: M75|MAG51_contig678_gene_3051
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig678_gene_3053
neighbor_status: known-like
neighbor_target: UniRef50_A0A0D0YTS8
neighbor_function: Poly(Glycerol-phosphate) alpha-glucosyltransferase
neighbor_target_header:
UniRef50_A0A0D0YTS8 Poly(Glycerol-phosphate) alpha-glucosyltransferase n=1 Tax=Paucilactobacillus wasatchensis TaxID=1335616 RepID=A0A0D0YTS8_9LACO


upf_id: UPF260_0036
query: M75|MAG51_contig678_gene_3054
sample: M75
mag: MAG51
neighbor_query: M75|MAG51_contig678_gene_3051
neighbor_status: partial/remote-homology
neighbor_target: UniRef50_A0A9X4L7B2
neighbor_function: Uncharacterized protein
neighbor_target_header:
UniRef50_A0A9X4L7B2 Uncharacterized protein n=1 Tax=Staphylococcus equorum TaxID=246432 RepID=A0A9X4L7B2_9STAP


upf_id: UPF260_0236
query: M75|MAG6_contig12_gene_172
sample: M75
mag: MAG6
neighbor_query: M75|MAG6_contig12_gene_171
neighbor_status: known-like
neighbor_target: UniRef50_A0A0R1WA63
neighbor_function: Tyr recombinase domain-containing protein
neighbor_target_header:
UniRef50_A0A0R1WA63 Tyr recombinase domain-containing protein n=58 Tax=Bacillati TaxID=1783272 RepID=A0A0R1WA63_9LACO


# classification

upf_id: UPF260_0007
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M65|MAG8_contig121_gene_1757
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: CAG29210.1|GT29|9-75|5.5e-27
pfam_target: PF15287.9
pfam_description: KRBA1 ; KRBA1 family repeat
pdb_target: 5JJ4_B
pdb_description:
Maltose-binding periplasmic protein,Single-stranded DNA cytosine; AID MBP-fuison Deaminase, HYDROLASE; HET: GLC; 2.807A {Escherichia coli O157:H7}


upf_id: UPF260_0036
functional_class: other function-associated
classification_confidence: high
selection_reason: recurrence_priority
representative_query: M70|MAG26_contig518_gene_1391
evidence_summary: Pfam MobL ; MobL relaxases; UniRef50_A0A160PRH3 Relaxase
dbcan_hmmscan_tier: none
dbcan_hh_target: CAK96739.1|GH71|22-409|3.6e-150
pfam_target: PF18555.4
pfam_description: MobL ; MobL relaxases
pdb_target: 4LVI_A
uniref_target: UniRef50_A0A160PRH3
uniref_description: UniRef50_A0A160PRH3 Relaxase n=2 Tax=Corynebacterium TaxID=1716 RepID=A0A160PRH3_9CORY
pdb_description:
Plasmid recombination enzyme; Protein-DNA complex, Pfam Family: Mob_Pre; 1.9A {Streptococcus agalactiae}


upf_id: UPF260_0236
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M75|MAG6_contig12_gene_172
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: ABS49747.1|PL2|17-549|2.7e-271
pfam_target: PF12958.10
pfam_description: DUF3847 ; Protein of unknown function (DUF3847)
pdb_target: 1Z4H_A
pdb_description: winged helix, reverse turn, PROTEIN; NMR {Escherichia coli}
uniref_target: UniRef50_A0A0R2BZC3
uniref_description:
UniRef50_A0A0R2BZC3 Uncharacterized protein n=12 Tax=Lactobacillaceae TaxID=33958 RepID=A0A0R2BZC3_9LACO


upf_id: UPF260_0229
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M75|MAG51_contig678_gene_3051
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: BAA76716.1|CBM12|24-59|2.2e-16
pfam_target: PF12870.10
pfam_description: DUF4878 ; Domain of unknown function (DUF4878)
pdb_target: 3K7C_A
uniref_target: UniRef50_A0A9X4L7B2
pdb_description:
Putative NTF2-like transpeptidase; Putative NTF2-like transpeptidase, Structural Genomics; HET: PGE, PEG, MSE; 2.0A {Campylobacter jejuni}

uniref_description:
UniRef50_A0A9X4L7B2 Uncharacterized protein n=1 Tax=Staphylococcus equorum TaxID=246432 RepID=A0A9X4L7B2_9STAP


upf_id: UPF260_0077
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M70|MAG38_contig403_gene_2192
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: ADU33272.1|GH5_10.hmm|4.3e-104|36-347
pfam_target: PF14715.9
pfam_description: FixP_N ; N-terminal domain of cytochrome oxidase-cbb3, FixP
pdb_target: 1L8W_A
pdb_description:
VlsE1; Variable Surface Protein, VMP-like sequence; HET: MSE; 2.3A {Borreliella burgdorferi} SCOP: a.154.1.1


upf_id: UPF260_0033
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M70|MAG26_contig435_gene_1181
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: ATB59914.1|GH13_4.hmm|2.1e-177|102-500
pfam_target: PF16902.8
pfam_description: FokI_D3 ; FokI, D3 domain
pdb_target: 5N7L_A
pdb_description:
Type II secretion system protein; periplasm, ferrodoxin fold, GspL protein; HET: GLU; 2.501A {Pseudomonas aeruginosa PAO1}


upf_id: UPF260_0148
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M75|MAG14_contig86_gene_1122
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: ATZ56129.1|GH5_23.hmm|3.7e-138|158-436
pfam_target: PF00515.31
pfam_description: TPR_1 ; Tetratricopeptide repeat
pdb_target: 2Y78_A
pdb_description:
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (E.C.5.2.1.8); ISOMERASE, MIP, PPIASE, VIRULENCE; HET: SO4, GOL; 0.91A {BURKHOLDERIA PSEUDOMALLEI}


upf_id: UPF260_0006
functional_class: structurally unresolved
classification_confidence: unresolved
selection_reason: recurrence_priority
representative_query: M65|MAG61_contig235_gene_1287
evidence_summary: no significant informative dbCAN/Pfam/PDB70 profile match
dbcan_hmmscan_tier: none
dbcan_hh_target: CBL13458.1|28-165
pfam_target: PF14819.9
pfam_description: QueF_N ; Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
pdb_target: 3Q2Y_A
uniref_target: UniRef50_A0A7S7FRK6
uniref_description: UniRef50_A0A7S7FRK6 Uncharacterized protein n=15 Tax=Bacillota TaxID=1239 RepID=A0A7S7FRK6_LACRG
pdb_description:
Multidrug-efflux transporter 1 regulator/DNA complex; Protein DNA complex, transcription regulator; HET: ET, GOL; 2.95A {Bacillus subtilis}


upf_id: UPF260_0002
functional_class: CAZyme-like
classification_confidence: high
selection_reason: strict_dbcan_rescue
representative_query: M65|MAG15_contig48_gene_1046
evidence_summary: dbCAN CE3 with strict HMM and HHsearch support; Pfam/UniRef converge on SGNH/GDSL hydrolase
dbcan_hmmscan_family: CE3
dbcan_hmmscan_tier: strict_dbcan
dbcan_hh_target: ABN52033.1|CE3|36-223|2.1e-57
pfam_target: PF16227.8
pfam_description: DUF4886 ; Domain of unknown function (DUF4886)
pdb_target: 5B5L_A
uniref_target: UniRef50_UPI003BA133D0
pdb_description:
acetyl esterase; Catalytic triad Complex, Carbohydrate esterase; HET: PEG; 1.4A {Talaromyces cellulolyticus}

uniref_description:
UniRef50_UPI003BA133D0 SGNH/GDSL hydrolase family protein n=3 Tax=Lactiplantibacillus plantarum TaxID=1590 RepID=UPI003BA133D0


# profile_uniref_hits

query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
target: UniRef50_A0A6A0BBP6
target_header:
UniRef50_A0A6A0BBP6 Uncharacterized protein n=1 Tax=Pseudolactococcus insecticola TaxID=2709158 RepID=A0A6A0BBP6_9LACT


query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
target: UniRef50_UPI001437EBC8
target_header:
UniRef50_UPI001437EBC8 relaxase MobL n=1 Tax=Ligilactobacillus agilis TaxID=1601 RepID=UPI001437EBC8


query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
target: UniRef50_UPI000C7D3E6C
target_header:
UniRef50_UPI000C7D3E6C hypothetical protein n=1 Tax=Ligilactobacillus agilis TaxID=1601 RepID=UPI000C7D3E6C


query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
target: UniRef50_UPI00083FB0F6
target_header:
UniRef50_UPI00083FB0F6 MobP2 family relaxase n=1 Tax=Brochothrix thermosphacta TaxID=2756 RepID=UPI00083FB0F6


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_A0ABU6NQE3
target_header:
UniRef50_A0ABU6NQE3 DUF1073 domain-containing protein n=7 Tax=Bacillales TaxID=1385 RepID=A0ABU6NQE3_9BACI


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_A0A2U3AKA3
target_header:
UniRef50_A0A2U3AKA3 Uncharacterized protein n=1 Tax=Kurthia sibirica TaxID=202750 RepID=A0A2U3AKA3_9BACL


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_UPI001437924D
target_header:
UniRef50_UPI001437924D hypothetical protein n=1 Tax=Ligilactobacillus agilis TaxID=1601 RepID=UPI001437924D


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_A0ABX1SQS0
target_header:
UniRef50_A0ABX1SQS0 Uncharacterized protein n=6 Tax=Staphylococcus TaxID=1279 RepID=A0ABX1SQS0_STACP


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_A0A6A0B7K8
target_header:
UniRef50_A0A6A0B7K8 Uncharacterized protein n=1 Tax=Pseudolactococcus insecticola TaxID=2709158 RepID=A0A6A0B7K8_9LACT


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_UPI00235DE184
target_header:
UniRef50_UPI00235DE184 type IV secretion system protein VirB4 n=2 Tax=Leuconostoc mesenteroides TaxID=1245 RepID=UPI00235DE184


query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
target: UniRef50_A0AAN2QU49
target_header:
UniRef50_A0AAN2QU49 Type IV secretion system protein VirB4 n=24 Tax=Bacillati TaxID=1783272 RepID=A0AAN2QU49_9LACO


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_UPI003F529D18
target_header:
UniRef50_UPI003F529D18 hypothetical protein n=1 Tax=Lactiplantibacillus plantarum TaxID=1590 RepID=UPI003F529D18


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_A0A5B8PAE9
target_header:
UniRef50_A0A5B8PAE9 Uncharacterized protein n=3 Tax=Lactobacillales TaxID=186826 RepID=A0A5B8PAE9_ENTFC


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_A0ABW1SNZ2
target_header:
UniRef50_A0ABW1SNZ2 Replication initiation protein n=3 Tax=Lactiplantibacillus TaxID=2767842 RepID=A0ABW1SNZ2_9LACO


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_A0ABR4XR98
target_header:
UniRef50_A0ABR4XR98 Uncharacterized protein n=1 Tax=Oenococcus alcoholitolerans TaxID=931074 RepID=A0ABR4XR98_9LACO


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_A0ABN0A6P5
target_header:
UniRef50_A0ABN0A6P5 Uncharacterized protein n=1 Tax=Aerococcus viridans (strain ATCC 11563 / DSM 20340 / CCUG 4311 / JCM 20461 / NBRC 12219 / NCTC 8251 / M1) TaxID=655812 RepID=A0ABN0A6P5_AERVM


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_A0A1L6RED3
target_header:
UniRef50_A0A1L6RED3 Uncharacterized protein n=2 Tax=Lactobacillaceae TaxID=33958 RepID=A0A1L6RED3_9LACO


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_UPI00232AA55B
target_header:
UniRef50_UPI00232AA55B hypothetical protein n=1 Tax=Aerococcus urinaeequi TaxID=51665 RepID=UPI00232AA55B


query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
target: UniRef50_UPI003B224F1E
target_header:
UniRef50_UPI003B224F1E hypothetical protein n=3 Tax=Aerococcus viridans TaxID=1377 RepID=UPI003B224F1E


query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
target: UniRef50_A0A240C3A7
target_header:
UniRef50_A0A240C3A7 Uncharacterized protein n=1 Tax=Staphylococcus muscae TaxID=1294 RepID=A0A240C3A7_9STAP


query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
target: UniRef50_A0ABS2GXT2
target_header:
UniRef50_A0ABS2GXT2 Transposase n=1 Tax=Limosilactobacillus coleohominis TaxID=181675 RepID=A0ABS2GXT2_9LACO


query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
target: UniRef50_A0ABW4BCF4
target_header:
UniRef50_A0ABW4BCF4 DUF4825 domain-containing protein n=9 Tax=Lactobacillaceae TaxID=33958 RepID=A0ABW4BCF4_9LACO


query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
target: UniRef50_A0ABX6C5A1
target_header:
UniRef50_A0ABX6C5A1 DUF2513 domain-containing protein n=32 Tax=Lactobacillaceae TaxID=33958 RepID=A0ABX6C5A1_9LACO


query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
target: UniRef50_A0A0R1QTC5
target_header:
UniRef50_A0A0R1QTC5 Uncharacterized protein n=2 Tax=Lacticaseibacillus manihotivorans TaxID=88233 RepID=A0A0R1QTC5_9LACO


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI000D797369
target_header:
UniRef50_UPI000D797369 BppU family phage baseplate upper protein n=1 Tax=Lactococcus lactis TaxID=1358 RepID=UPI000D797369


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI00207D3BDA
target_header:
UniRef50_UPI00207D3BDA BppU family phage baseplate upper protein n=4 Tax=Lactococcus lactis TaxID=1358 RepID=UPI00207D3BDA


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0001D1FB3F
target_header:
UniRef50_UPI0001D1FB3F SGNH/GDSL hydrolase family protein n=2 Tax=Leuconostoc kimchii TaxID=136609 RepID=UPI0001D1FB3F


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0A1B3XMQ4
target_header:
UniRef50_A0A1B3XMQ4 SGNH hydrolase-type esterase domain-containing protein n=1 Tax=Peribacillus muralis TaxID=264697 RepID=A0A1B3XMQ4_9BACI


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0A317KTE2
target_header:
UniRef50_A0A317KTE2 SGNH hydrolase-type esterase domain-containing protein n=1 Tax=Gracilibacillus dipsosauri TaxID=178340 RepID=A0A317KTE2_9BACI


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0ACH3D4N6
target_header:
UniRef50_A0ACH3D4N6 SGNH/GDSL hydrolase family protein n=1 Tax=Chryseomicrobium aureum TaxID=1441723 RepID=A0ACH3D4N6_9BACL


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0025CFB996
target_header:
UniRef50_UPI0025CFB996 SGNH/GDSL hydrolase family protein n=1 Tax=uncultured Ruminococcus sp. TaxID=165186 RepID=UPI0025CFB996


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0037BFB8A7
target_header:
UniRef50_UPI0037BFB8A7 SGNH/GDSL hydrolase family protein n=1 Tax=Lactococcus lactis subsp. cremoris TaxID=1359 RepID=UPI0037BFB8A7


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI00288DEABD
target_header:
UniRef50_UPI00288DEABD SGNH/GDSL hydrolase family protein n=1 Tax=Enterococcus casseliflavus TaxID=37734 RepID=UPI00288DEABD


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0009EF9136
target_header:
UniRef50_UPI0009EF9136 SGNH/GDSL hydrolase family protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI0009EF9136


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0A0R1WXN4
target_header:
UniRef50_A0A0R1WXN4 BppU N-terminal domain-containing protein n=2 Tax=Ligilactobacillus hayakitensis TaxID=396716 RepID=A0A0R1WXN4_9LACO


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0009EFAD51
target_header:
UniRef50_UPI0009EFAD51 SGNH/GDSL hydrolase family protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI0009EFAD51


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI000B3A91AA
target_header:
UniRef50_UPI000B3A91AA SGNH/GDSL hydrolase family protein n=1 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI000B3A91AA


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0A437KH49
target_header:
UniRef50_A0A437KH49 DUF2479 domain-containing protein n=1 Tax=Niallia taxi TaxID=2499688 RepID=A0A437KH49_9BACI


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0007B1A38F
target_header:
UniRef50_UPI0007B1A38F SGNH/GDSL hydrolase family protein n=3 Tax=Lactococcus TaxID=1357 RepID=UPI0007B1A38F


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI0021B37BAF
target_header:
UniRef50_UPI0021B37BAF SGNH/GDSL hydrolase family protein n=2 Tax=Ligilactobacillus TaxID=2767887 RepID=UPI0021B37BAF


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0ABX0HC73
target_header:
UniRef50_A0ABX0HC73 SGNH hydrolase-type esterase domain-containing protein n=1 Tax=Cyclobacterium plantarum TaxID=2716263 RepID=A0ABX0HC73_9BACT


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0A9Q3W8Y5
target_header:
UniRef50_A0A9Q3W8Y5 SGNH/GDSL hydrolase family protein n=1 Tax=Alloalcanivorax xenomutans TaxID=1094342 RepID=A0A9Q3W8Y5_9GAMM


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI002902A9C0
target_header:
UniRef50_UPI002902A9C0 GDSL-type esterase/lipase family protein n=1 Tax=Clostridium sp. TaxID=1506 RepID=UPI002902A9C0


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI00257545DD
target_header:
UniRef50_UPI00257545DD SGNH/GDSL hydrolase family protein n=3 Tax=Empedobacter brevis TaxID=247 RepID=UPI00257545DD


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0ABV1C1Z6
target_header:
UniRef50_A0ABV1C1Z6 SGNH/GDSL hydrolase family protein n=2 Tax=Clostridia TaxID=186801 RepID=A0ABV1C1Z6_9FIRM


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0A2X2WS18
target_header:
UniRef50_A0A2X2WS18 Uncharacterized protein n=1 Tax=Enterocloster clostridioformis TaxID=1531 RepID=A0A2X2WS18_9FIRM


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_A0ABX5YV06
target_header:
UniRef50_A0ABX5YV06 SGNH hydrolase-type esterase domain-containing protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0ABX5YV06_9PLAN


query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
target: UniRef50_UPI00106DE722
target_header:
UniRef50_UPI00106DE722 SGNH/GDSL hydrolase family protein n=2 Tax=Bacillus TaxID=1386 RepID=UPI00106DE722


# hhsearch_hits

upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 5B5L_A acetyl esterase; Cataly
target_id: 5B5L_A
hhr_file: UPF260_0002.hhr
hit_full:
5B5L_A acetyl esterase; Catalytic triad Complex, Carbohydrate esterase; HET: PEG; 1.4A {Talaromyces cellulolyticus}

target_description:
acetyl esterase; Catalytic triad Complex, Carbohydrate esterase; HET: PEG; 1.4A {Talaromyces cellulolyticus}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 5HOE_A Hydrolase; Est24, carbo
target_id: 5HOE_A
hhr_file: UPF260_0002.hhr
hit_full:
5HOE_A Hydrolase; Est24, carbohydrate acetylesterase, Sinorhizobium meliloti; HET: PO4, P6G; 1.45A {Rhizobium meliloti (strain 1021)}

target_description:
Hydrolase; Est24, carbohydrate acetylesterase, Sinorhizobium meliloti; HET: PO4, P6G; 1.45A {Rhizobium meliloti (strain 1021)}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4HYQ_A phospholipase A1 (E.C.3
target_id: 4HYQ_A
hhr_file: UPF260_0002.hhr
hit_full:
4HYQ_A phospholipase A1 (E.C.3.1.1.32); lipase, glycerophospholipid, HYDROLASE; HET: 1PE; 1.75A {Streptomyces albidoflavus}

target_description:
phospholipase A1 (E.C.3.1.1.32); lipase, glycerophospholipid, HYDROLASE; HET: 1PE; 1.75A {Streptomyces albidoflavus}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4I8I_A hypothetical protein; 5
target_id: 4I8I_A
target_description: hypothetical protein; 5-stranded beta sheet flanked by; HET: MSE; 1.5A {Bacteroides uniformis}
hhr_file: UPF260_0002.hhr
hit_full:
4I8I_A hypothetical protein; 5-stranded beta sheet flanked by; HET: MSE; 1.5A {Bacteroides uniformis}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 2Q0Q_B Aryl Esterase; SGNH hyd
target_id: 2Q0Q_B
hhr_file: UPF260_0002.hhr
hit_full:
2Q0Q_B Aryl Esterase; SGNH hydrolase, oligomeric enzyme, Acyl; HET: SO4, GOL, MSE; 1.5A {Mycobacterium smegmatis}

target_description:
Aryl Esterase; SGNH hydrolase, oligomeric enzyme, Acyl; HET: SO4, GOL, MSE; 1.5A {Mycobacterium smegmatis}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4K3U_A GDSL-like Lipase/Acylhy
target_id: 4K3U_A
hhr_file: UPF260_0002.hhr
hit_full:
4K3U_A GDSL-like Lipase/Acylhydrolase family protein; alpha/Beta fold, peptidoglycan hydrolase, HYDROLASE; HET: EPE; 2.158A {Neisseria meningitidis}

target_description:
GDSL-like Lipase/Acylhydrolase family protein; alpha/Beta fold, peptidoglycan hydrolase, HYDROLASE; HET: EPE; 2.158A {Neisseria meningitidis}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4K7J_A GDSL-like Lipase/Acylhy
target_id: 4K7J_A
hhr_file: UPF260_0002.hhr
hit_full:
4K7J_A GDSL-like Lipase/Acylhydrolase family protein; alpha/Beta fold, peptidoglycan hydrolase, HYDROLASE; HET: EPE; 1.968A {Neisseria meningitidis}

target_description:
GDSL-like Lipase/Acylhydrolase family protein; alpha/Beta fold, peptidoglycan hydrolase, HYDROLASE; HET: EPE; 1.968A {Neisseria meningitidis}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4RW0_A Lipolytic protein G-D-S
target_id: 4RW0_A
hhr_file: UPF260_0002.hhr
hit_full:
4RW0_A Lipolytic protein G-D-S-L family; lipolytic protein G-D-S-L family, MCSG; HET: GOL, MSE; 2.0A {Veillonella parvula DSM 2008}

target_description:
Lipolytic protein G-D-S-L family; lipolytic protein G-D-S-L family, MCSG; HET: GOL, MSE; 2.0A {Veillonella parvula DSM 2008}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4RW0_B Lipolytic protein G-D-S
target_id: 4RW0_B
hhr_file: UPF260_0002.hhr
hit_full:
4RW0_B Lipolytic protein G-D-S-L family; lipolytic protein G-D-S-L family, MCSG; HET: GOL, MSE; 2.0A {Veillonella parvula DSM 2008}

target_description:
Lipolytic protein G-D-S-L family; lipolytic protein G-D-S-L family, MCSG; HET: GOL, MSE; 2.0A {Veillonella parvula DSM 2008}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 3DCI_A Arylesterase; Agrobacte
target_id: 3DCI_A
hhr_file: UPF260_0002.hhr
hit_full:
3DCI_A Arylesterase; Agrobacterium tumefaciens, arylesterase, SGNH_hydrolase subfamily; HET: CL, ACY, MSE; 2.0A {Agrobacterium tumefaciens str.}

target_description:
Arylesterase; Agrobacterium tumefaciens, arylesterase, SGNH_hydrolase subfamily; HET: CL, ACY, MSE; 2.0A {Agrobacterium tumefaciens str.}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 2VPT_A LIPOLYTIC ENZYME (E.C.3
target_id: 2VPT_A
target_description: LIPOLYTIC ENZYME (E.C.3.1.1.72); ESTERASE, HYDROLASE; HET: MSE; 1.4A {CLOSTRIDIUM THERMOCELLUM}
hhr_file: UPF260_0002.hhr
hit_full:
2VPT_A LIPOLYTIC ENZYME (E.C.3.1.1.72); ESTERASE, HYDROLASE; HET: MSE; 1.4A {CLOSTRIDIUM THERMOCELLUM}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 6NJC_A Inosine-5'-monophosphat
target_id: 6NJC_A
hhr_file: UPF260_0002.hhr
hit_full:
6NJC_A Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase (E.C.1.1.1.205,1.1.1.205); Sialate O-acetylesterase, alpha-beta fold, Structural; HET: GOL, ACY, MSE; 1.9A {Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154)}

target_description:
Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase (E.C.1.1.1.205,1.1.1.205); Sialate O-acetylesterase, alpha-beta fold, Structural; HET: GOL, ACY, MSE; 1.9A {Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / JCM 5826 / NBRC 14291 / NCTC 11154)}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 6XPG_A Inosine-5'-monophosphat
target_id: 6XPG_A
hhr_file: UPF260_0002.hhr
hit_full:
6XPG_A Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase (E.C.1.1.1.205,1.1.1.205); Sialate O-acetylesterase, alpha-beta fold, Serial; HET: MSE; 1.9A {Bacteroides vulgatus}

target_description:
Inosine-5'-monophosphate dehydrogenase,Inosine-5'-monophosphate dehydrogenase (E.C.1.1.1.205,1.1.1.205); Sialate O-acetylesterase, alpha-beta fold, Serial; HET: MSE; 1.9A {Bacteroides vulgatus}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 1ESE_A ESTERASE, DIETHYLPHOSPH
target_id: 1ESE_A
hhr_file: UPF260_0002.hhr
hit_full:
1ESE_A ESTERASE, DIETHYLPHOSPHONO GROUP; HYDROLASE (SERINE ESTERASE); 2.4A {Streptomyces scabiei} SCOP: c.23.10.1

target_description:
ESTERASE, DIETHYLPHOSPHONO GROUP; HYDROLASE (SERINE ESTERASE); 2.4A {Streptomyces scabiei} SCOP: c.23.10.1


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 5MAL_A Lipase (E.C.3.1.1.3,3.1
target_id: 5MAL_A
hhr_file: UPF260_0002.hhr
hit_full:
5MAL_A Lipase (E.C.3.1.1.3,3.1.1.-,3.1.2.2); SGNH hydrolase, multifunctional enzyme from; 1.708A {Streptomyces rimosus}

target_description:
Lipase (E.C.3.1.1.3,3.1.1.-,3.1.2.2); SGNH hydrolase, multifunctional enzyme from; 1.708A {Streptomyces rimosus}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4Q7Q_A Lipolytic protein G-D-S
target_id: 4Q7Q_A
hhr_file: UPF260_0002.hhr
hit_full:
4Q7Q_A Lipolytic protein G-D-S-L family; structural genomics, PSI-Biology, protein structure; HET: PG4, FMT, MSE; 1.451A {Chitinophaga pinensis}

target_description:
Lipolytic protein G-D-S-L family; structural genomics, PSI-Biology, protein structure; HET: PG4, FMT, MSE; 1.451A {Chitinophaga pinensis}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 4Q7Q_B Lipolytic protein G-D-S
target_id: 4Q7Q_B
hhr_file: UPF260_0002.hhr
hit_full:
4Q7Q_B Lipolytic protein G-D-S-L family; structural genomics, PSI-Biology, protein structure; HET: PG4, FMT, MSE; 1.451A {Chitinophaga pinensis}

target_description:
Lipolytic protein G-D-S-L family; structural genomics, PSI-Biology, protein structure; HET: PG4, FMT, MSE; 1.451A {Chitinophaga pinensis}


upf_id: UPF260_0002
query: UPF260_0002|rep=M65|MAG15_contig48_gene_1046|size=1|mags=1|samples=1
database: PDB70_20220319
hit: 7C2A_A SGNH-hydrolase family e
target_id: 7C2A_A
hhr_file: UPF260_0002.hhr
hit_full:
7C2A_A SGNH-hydrolase family esterase; esterase, SGNH-hydrolase family, marine, HYDROLASE; HET: ACT; 1.18A {Altererythrobacter indicus}

target_description:
SGNH-hydrolase family esterase; esterase, SGNH-hydrolase family, marine, HYDROLASE; HET: ACT; 1.18A {Altererythrobacter indicus}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3Q2Y_A Multidrug-efflux transp
target_id: 3Q2Y_A
hhr_file: UPF260_0006.hhr
hit_full:
3Q2Y_A Multidrug-efflux transporter 1 regulator/DNA complex; Protein DNA complex, transcription regulator; HET: ET, GOL; 2.95A {Bacillus subtilis}

target_description:
Multidrug-efflux transporter 1 regulator/DNA complex; Protein DNA complex, transcription regulator; HET: ET, GOL; 2.95A {Bacillus subtilis}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5C3L_B Nucleoporin Nup54, MGC8
target_id: 5C3L_B
hhr_file: UPF260_0006.hhr
hit_full:
5C3L_B Nucleoporin Nup54, MGC84997 protein, Nucleoporin; nucleoporin, heterotrimeric coiled coils, kink; 2.9A {Xenopus laevis}

target_description:
Nucleoporin Nup54, MGC84997 protein, Nucleoporin; nucleoporin, heterotrimeric coiled coils, kink; 2.9A {Xenopus laevis}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 4JO7_G Nucleoporin p54, Nucleo
target_id: 4JO7_G
hhr_file: UPF260_0006.hhr
hit_full:
4JO7_G Nucleoporin p54, Nucleoporin p58/p45; Nucleocytoplasmic transport, TRANSPORT PROTEIN; HET: MSE; 1.752A {Homo sapiens}

target_description:
Nucleoporin p54, Nucleoporin p58/p45; Nucleocytoplasmic transport, TRANSPORT PROTEIN; HET: MSE; 1.752A {Homo sapiens}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5CWS_J sAB-158 LC, sAB-158 HC,
target_id: 5CWS_J
hhr_file: UPF260_0006.hhr
hit_full:
5CWS_J sAB-158 LC, sAB-158 HC, Nucleoporin; nucleocytoplasmic transport, PROTEIN TRANSPORT; 3.77A {Homo sapiens}

target_description:
sAB-158 LC, sAB-158 HC, Nucleoporin; nucleocytoplasmic transport, PROTEIN TRANSPORT; 3.77A {Homo sapiens}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5XBT_A Probable transcriptiona
target_id: 5XBT_A
hhr_file: UPF260_0006.hhr
hit_full:
5XBT_A Probable transcriptional regulator; c-di-GMP, Receptor, HTH domain, DNA; HET: IMD, GOL, PEG, C2E; 2.495A {Pseudomonas aeruginosa PAO1}

target_description:
Probable transcriptional regulator; c-di-GMP, Receptor, HTH domain, DNA; HET: IMD, GOL, PEG, C2E; 2.495A {Pseudomonas aeruginosa PAO1}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 2ZCM_B helix-turn-helix, biofi
target_id: 2ZCM_B
target_description: helix-turn-helix, biofilm, TetR family, repressor; HET: MSE; 1.33A {Staphylococcus epidermidis}
hhr_file: UPF260_0006.hhr
hit_full:
2ZCM_B helix-turn-helix, biofilm, TetR family, repressor; HET: MSE; 1.33A {Staphylococcus epidermidis}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5DYM_A PadR-family transcripti
target_id: 5DYM_A
hhr_file: UPF260_0006.hhr
hit_full:
5DYM_A PadR-family transcriptional regulator; PadR, wHTH DNA binding domain; 1.894A {Peptoclostridium difficile (strain R20291)}

target_description:
PadR-family transcriptional regulator; PadR, wHTH DNA binding domain; 1.894A {Peptoclostridium difficile (strain R20291)}


upf_id: UPF260_0006
query: UPF260_0006|rep=M65|MAG61_contig235_gene_1287|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 1P4A_A Pur operon repressor; T
target_id: 1P4A_A
target_description: Pur operon repressor; TRANSCRIPTION; HET: PCP; 2.22A {Bacillus subtilis} SCOP: a.4.5.40, c.61.1.1
hhr_file: UPF260_0006.hhr
hit_full:
1P4A_A Pur operon repressor; TRANSCRIPTION; HET: PCP; 2.22A {Bacillus subtilis} SCOP: a.4.5.40, c.61.1.1


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 5JJ4_B Maltose-binding peripla
target_id: 5JJ4_B
hhr_file: UPF260_0007.hhr
hit_full:
5JJ4_B Maltose-binding periplasmic protein,Single-stranded DNA cytosine; AID MBP-fuison Deaminase, HYDROLASE; HET: GLC; 2.807A {Escherichia coli O157:H7}

target_description:
Maltose-binding periplasmic protein,Single-stranded DNA cytosine; AID MBP-fuison Deaminase, HYDROLASE; HET: GLC; 2.807A {Escherichia coli O157:H7}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 3FD9_A Uncharacterized protein
target_id: 3FD9_A
hhr_file: UPF260_0007.hhr
hit_full:
3FD9_A Uncharacterized protein; Anti-activator, Transcription regulation, Pseudomonas, repressor; HET: MSE; 2.6A {Pseudomonas aeruginosa UCBPP-PA14}

target_description:
Uncharacterized protein; Anti-activator, Transcription regulation, Pseudomonas, repressor; HET: MSE; 2.6A {Pseudomonas aeruginosa UCBPP-PA14}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 3FD9_B Uncharacterized protein
target_id: 3FD9_B
hhr_file: UPF260_0007.hhr
hit_full:
3FD9_B Uncharacterized protein; Anti-activator, Transcription regulation, Pseudomonas, repressor; HET: MSE; 2.6A {Pseudomonas aeruginosa UCBPP-PA14}

target_description:
Uncharacterized protein; Anti-activator, Transcription regulation, Pseudomonas, repressor; HET: MSE; 2.6A {Pseudomonas aeruginosa UCBPP-PA14}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 4JDQ_C Slr1964 protein; photop
target_id: 4JDQ_C
hhr_file: UPF260_0007.hhr
hit_full:
4JDQ_C Slr1964 protein; photoprotection, non-photochemical quenching, PROTEIN BINDING; 3.52A {Synechocystis sp.}

target_description:
Slr1964 protein; photoprotection, non-photochemical quenching, PROTEIN BINDING; 3.52A {Synechocystis sp.}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 4JDX_E Slr1964 protein; photop
target_id: 4JDX_E
hhr_file: UPF260_0007.hhr
hit_full:
4JDX_E Slr1964 protein; photoprotection, non-photochemical quenching, PROTEIN BINDING; 2.5A {Synechocystis sp.}

target_description:
Slr1964 protein; photoprotection, non-photochemical quenching, PROTEIN BINDING; 2.5A {Synechocystis sp.}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 3BL2_B V-bcl-2, Beclin-1; prot
target_id: 3BL2_B
hhr_file: UPF260_0007.hhr
hit_full:
3BL2_B V-bcl-2, Beclin-1; protein-protein complex, viral BCL-2, Beclin1; 2.3A {Murid herpesvirus 4} SCOP: f.1.4.1

target_description:
V-bcl-2, Beclin-1; protein-protein complex, viral BCL-2, Beclin1; 2.3A {Murid herpesvirus 4} SCOP: f.1.4.1


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 5TZ0_A Uncharacterized protein
target_id: 5TZ0_A
hhr_file: UPF260_0007.hhr
hit_full:
5TZ0_A Uncharacterized protein; PHOTOPROTECTION, NON-PHOTOCHEMICAL QUENCHING, PROTEIN BINDING; 3.025A {Tolypothrix sp. PCC 7601}

target_description:
Uncharacterized protein; PHOTOPROTECTION, NON-PHOTOCHEMICAL QUENCHING, PROTEIN BINDING; 3.025A {Tolypothrix sp. PCC 7601}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 5TZ0_B Uncharacterized protein
target_id: 5TZ0_B
hhr_file: UPF260_0007.hhr
hit_full:
5TZ0_B Uncharacterized protein; PHOTOPROTECTION, NON-PHOTOCHEMICAL QUENCHING, PROTEIN BINDING; 3.025A {Tolypothrix sp. PCC 7601}

target_description:
Uncharacterized protein; PHOTOPROTECTION, NON-PHOTOCHEMICAL QUENCHING, PROTEIN BINDING; 3.025A {Tolypothrix sp. PCC 7601}


upf_id: UPF260_0007
query: UPF260_0007|rep=M65|MAG8_contig121_gene_1757|size=3|mags=3|samples=1
database: PDB70_20220319
hit: 5W0R_A MBP fused activation-in
target_id: 5W0R_A
hhr_file: UPF260_0007.hhr
hit_full:
5W0R_A MBP fused activation-induced cytidine deaminase; Class switch recombination, Cytidine deaminase; HET: CAC; 2.4A {Escherichia coli O157:H7}

target_description:
MBP fused activation-induced cytidine deaminase; Class switch recombination, Cytidine deaminase; HET: CAC; 2.4A {Escherichia coli O157:H7}


upf_id: UPF260_0010
query: UPF260_0010|rep=M70|MAG13_contig6_gene_251|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6IXH_C Type VI Secretion Syste
target_id: 6IXH_C
hhr_file: UPF260_0010.hhr
hit_full:
6IXH_C Type VI Secretion System TssJ; Type VI secretion system membrane; 4.0A {Escherichia coli (strain 55989 / EAEC)}

target_description:
Type VI Secretion System TssJ; Type VI secretion system membrane; 4.0A {Escherichia coli (strain 55989 / EAEC)}


upf_id: UPF260_0010
query: UPF260_0010|rep=M70|MAG13_contig6_gene_251|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6IXH_M Type VI Secretion Syste
target_id: 6IXH_M
hhr_file: UPF260_0010.hhr
hit_full:
6IXH_M Type VI Secretion System TssJ; Type VI secretion system membrane; 4.0A {Escherichia coli (strain 55989 / EAEC)}

target_description:
Type VI Secretion System TssJ; Type VI secretion system membrane; 4.0A {Escherichia coli (strain 55989 / EAEC)}


upf_id: UPF260_0010
query: UPF260_0010|rep=M70|MAG13_contig6_gene_251|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 4B2N_A 70 KDA PROTEIN; ELECTRO
target_id: 4B2N_A
hhr_file: UPF260_0010.hhr
hit_full:
4B2N_A 70 KDA PROTEIN; ELECTRON TRANSPORT, CYTOCHROME, RUBBER OXYGENASE; HET: EPE, HEC; 1.8A {XANTHOMONAS SP.}

target_description:
70 KDA PROTEIN; ELECTRON TRANSPORT, CYTOCHROME, RUBBER OXYGENASE; HET: EPE, HEC; 1.8A {XANTHOMONAS SP.}


upf_id: UPF260_0010
query: UPF260_0010|rep=M70|MAG13_contig6_gene_251|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5LTV_D Chemotactic transducer
target_id: 5LTV_D
hhr_file: UPF260_0010.hhr
hit_full:
5LTV_D Chemotactic transducer PctC; Ligand binding domain, Pseudomonas aeruginosa; HET: SO4, ABU, ACT, GOL; 2.31A {Pseudomonas aeruginosa}

target_description:
Chemotactic transducer PctC; Ligand binding domain, Pseudomonas aeruginosa; HET: SO4, ABU, ACT, GOL; 2.31A {Pseudomonas aeruginosa}


upf_id: UPF260_0010
query: UPF260_0010|rep=M70|MAG13_contig6_gene_251|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5LTV_E Chemotactic transducer
target_id: 5LTV_E
hhr_file: UPF260_0010.hhr
hit_full:
5LTV_E Chemotactic transducer PctC; Ligand binding domain, Pseudomonas aeruginosa; HET: SO4, ABU, ACT, GOL; 2.31A {Pseudomonas aeruginosa}

target_description:
Chemotactic transducer PctC; Ligand binding domain, Pseudomonas aeruginosa; HET: SO4, ABU, ACT, GOL; 2.31A {Pseudomonas aeruginosa}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5N7L_A Type II secretion syste
target_id: 5N7L_A
hhr_file: UPF260_0033.hhr
hit_full:
5N7L_A Type II secretion system protein; periplasm, ferrodoxin fold, GspL protein; HET: GLU; 2.501A {Pseudomonas aeruginosa PAO1}

target_description:
Type II secretion system protein; periplasm, ferrodoxin fold, GspL protein; HET: GLU; 2.501A {Pseudomonas aeruginosa PAO1}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6GHU_A Type II secretion syste
target_id: 6GHU_A
target_description: Type II secretion system protein; ferredoxin fold, dimer, GspL, type; 2.0A {Pseudomonas aeruginosa}
hhr_file: UPF260_0033.hhr
hit_full:
6GHU_A Type II secretion system protein; ferredoxin fold, dimer, GspL, type; 2.0A {Pseudomonas aeruginosa}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6GHU_B Type II secretion syste
target_id: 6GHU_B
target_description: Type II secretion system protein; ferredoxin fold, dimer, GspL, type; 2.0A {Pseudomonas aeruginosa}
hhr_file: UPF260_0033.hhr
hit_full:
6GHU_B Type II secretion system protein; ferredoxin fold, dimer, GspL, type; 2.0A {Pseudomonas aeruginosa}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3E97_A Transcriptional regulat
target_id: 3E97_A
hhr_file: UPF260_0033.hhr
hit_full:
3E97_A Transcriptional regulator, Crp/Fnr family; YP_604437.1, transcriptional regulator, Crp/Fnr family; HET: MSE; 1.86A {Deinococcus geothermalis DSM 11300}

target_description:
Transcriptional regulator, Crp/Fnr family; YP_604437.1, transcriptional regulator, Crp/Fnr family; HET: MSE; 1.86A {Deinococcus geothermalis DSM 11300}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 2W7V_B GENERAL SECRETION PATHW
target_id: 2W7V_B
hhr_file: UPF260_0033.hhr
hit_full:
2W7V_B GENERAL SECRETION PATHWAY PROTEIN L; TRANSPORT, TYPE II SECRETION, TRANSPORT; HET: PO4, MSE; 2.3A {VIBRIO PARAHAEMOLYTICUS}

target_description:
GENERAL SECRETION PATHWAY PROTEIN L; TRANSPORT, TYPE II SECRETION, TRANSPORT; HET: PO4, MSE; 2.3A {VIBRIO PARAHAEMOLYTICUS}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5V8W_G Integrator complex subu
target_id: 5V8W_G
hhr_file: UPF260_0033.hhr
hit_full:
5V8W_G Integrator complex subunit 9, Integrator; snRNA processing, integrator complex, HYDROLASE; 2.1A {Homo sapiens}

target_description:
Integrator complex subunit 9, Integrator; snRNA processing, integrator complex, HYDROLASE; 2.1A {Homo sapiens}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5HL8_B Type II secretion syste
target_id: 5HL8_B
hhr_file: UPF260_0033.hhr
hit_full:
5HL8_B Type II secretion system protein; pullulanase-specific type II secretion system; HET: MSE; 1.93A {Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044}

target_description:
Type II secretion system protein; pullulanase-specific type II secretion system; HET: MSE; 1.93A {Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044}


upf_id: UPF260_0033
query: UPF260_0033|rep=M70|MAG26_contig435_gene_1181|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5HL8_D Type II secretion syste
target_id: 5HL8_D
hhr_file: UPF260_0033.hhr
hit_full:
5HL8_D Type II secretion system protein; pullulanase-specific type II secretion system; HET: MSE; 1.93A {Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044}

target_description:
Type II secretion system protein; pullulanase-specific type II secretion system; HET: MSE; 1.93A {Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 4LVI_A Plasmid recombination e
target_id: 4LVI_A
hhr_file: UPF260_0036.hhr
hit_full:
4LVI_A Plasmid recombination enzyme; Protein-DNA complex, Pfam Family: Mob_Pre; 1.9A {Streptococcus agalactiae}

target_description:
Plasmid recombination enzyme; Protein-DNA complex, Pfam Family: Mob_Pre; 1.9A {Streptococcus agalactiae}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 4LVL_A Plasmid recombination e
target_id: 4LVL_A
hhr_file: UPF260_0036.hhr
hit_full:
4LVL_A Plasmid recombination enzyme; Protein-DNA complex, Pfam Family: Mob_Pre; 2.2A {Streptococcus agalactiae}

target_description:
Plasmid recombination enzyme; Protein-DNA complex, Pfam Family: Mob_Pre; 2.2A {Streptococcus agalactiae}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2NS6_A Mobilization protein A
target_id: 2NS6_A
hhr_file: UPF260_0036.hhr
hit_full:
2NS6_A Mobilization protein A (E.C.3.6.1.-); nickase, 5-strand antiparallel beta sheet; 2.1A {Pseudomonas aeruginosa}

target_description:
Mobilization protein A (E.C.3.6.1.-); nickase, 5-strand antiparallel beta sheet; 2.1A {Pseudomonas aeruginosa}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 4GUC_A Protein BA_2500; virule
target_id: 4GUC_A
hhr_file: UPF260_0036.hhr
hit_full:
4GUC_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, Center; HET: PGE, PEG, MSE; 1.4A {Bacillus anthracis}

target_description:
Protein BA_2500; virulence, pathogenesis, vaccine candidate, Center; HET: PGE, PEG, MSE; 1.4A {Bacillus anthracis}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2P0X_A abiotic ATP-binding, fo
target_id: 2P0X_A
hhr_file: UPF260_0036.hhr
hit_full:
2P0X_A abiotic ATP-binding, folding optimized protein; alpha/beta fold  treble clef; HET: ZN, ATP; NMR {synthetic gene}

target_description:
abiotic ATP-binding, folding optimized protein; alpha/beta fold  treble clef; HET: ZN, ATP; NMR {synthetic gene}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2P09_A a non-biological ATP bi
target_id: 2P09_A
hhr_file: UPF260_0036.hhr
hit_full:
2P09_A a non-biological ATP binding protein; alpha/beta fold, DE NOVO PROTEIN; HET: ATP, 1PE; 1.65A {unidentified}

target_description:
a non-biological ATP binding protein; alpha/beta fold, DE NOVO PROTEIN; HET: ATP, 1PE; 1.65A {unidentified}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 4HT4_A Nicking enzyme, dna; va
target_id: 4HT4_A
hhr_file: UPF260_0036.hhr
hit_full:
4HT4_A Nicking enzyme, dna; vancomycin resistance plasmid, DNA relaxase; HET: MSE; 2.907A {Staphylococcus aureus}

target_description:
Nicking enzyme, dna; vancomycin resistance plasmid, DNA relaxase; HET: MSE; 2.907A {Staphylococcus aureus}


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 1OMH_A TrwC protein/DNA Comple
target_id: 1OMH_A
hhr_file: UPF260_0036.hhr
hit_full:
1OMH_A TrwC protein/DNA Complex; PROTEIN-DNA COMPLEX, BACTERIAL CONJUGATION, RELAXASE; HET: SO4, MSE; 1.95A {Escherichia coli} SCOP: d.89.1.5

target_description:
TrwC protein/DNA Complex; PROTEIN-DNA COMPLEX, BACTERIAL CONJUGATION, RELAXASE; HET: SO4, MSE; 1.95A {Escherichia coli} SCOP: d.89.1.5


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 1OSB_A Bacterial conjugation,
target_id: 1OSB_A
target_description: Bacterial conjugation, Relaxase, DNA replication; HET: SO4; 2.65A {Escherichia coli} SCOP: d.89.1.5
hhr_file: UPF260_0036.hhr
hit_full:
1OSB_A Bacterial conjugation, Relaxase, DNA replication; HET: SO4; 2.65A {Escherichia coli} SCOP: d.89.1.5


upf_id: UPF260_0036
query: UPF260_0036|rep=M70|MAG26_contig518_gene_1391|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 1ZM5_A TrwC/DNA Complex; PROTE
target_id: 1ZM5_A
hhr_file: UPF260_0036.hhr
hit_full:
1ZM5_A TrwC/DNA Complex; PROTEIN-DNA COMPLEX, BACTERIAL CONJUGATION, RELAXASE; HET: MSE; 2.5A {Escherichia coli} SCOP: d.89.1.5

target_description:
TrwC/DNA Complex; PROTEIN-DNA COMPLEX, BACTERIAL CONJUGATION, RELAXASE; HET: MSE; 2.5A {Escherichia coli} SCOP: d.89.1.5


upf_id: UPF260_0037
query: UPF260_0037|rep=M70|MAG26_contig548_gene_1478|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6GAP_A Outer capsid protein si
target_id: 6GAP_A
hhr_file: UPF260_0037.hhr
hit_full:
6GAP_A Outer capsid protein sigma-1; cell attachment protein, reovirus sigma1; 2.15A {Mammalian orthoreovirus 3 Dearing}

target_description:
Outer capsid protein sigma-1; cell attachment protein, reovirus sigma1; 2.15A {Mammalian orthoreovirus 3 Dearing}


upf_id: UPF260_0037
query: UPF260_0037|rep=M70|MAG26_contig548_gene_1478|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6GAP_B Outer capsid protein si
target_id: 6GAP_B
hhr_file: UPF260_0037.hhr
hit_full:
6GAP_B Outer capsid protein sigma-1; cell attachment protein, reovirus sigma1; 2.15A {Mammalian orthoreovirus 3 Dearing}

target_description:
Outer capsid protein sigma-1; cell attachment protein, reovirus sigma1; 2.15A {Mammalian orthoreovirus 3 Dearing}


upf_id: UPF260_0037
query: UPF260_0037|rep=M70|MAG26_contig548_gene_1478|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3OJA_B Leucine-rich Immune Mol
target_id: 3OJA_B
hhr_file: UPF260_0037.hhr
hit_full:
3OJA_B Leucine-rich Immune Molecule 1/Anopheles Plasmodium-responsive; coiled-coil, helix-loop-helix, leucine-rich repeat, PROTEIN; HET: NAG, MAN; 2.7A {Anopheles gambiae}

target_description:
Leucine-rich Immune Molecule 1/Anopheles Plasmodium-responsive; coiled-coil, helix-loop-helix, leucine-rich repeat, PROTEIN; HET: NAG, MAN; 2.7A {Anopheles gambiae}


upf_id: UPF260_0037
query: UPF260_0037|rep=M70|MAG26_contig548_gene_1478|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3N7N_B Monopolin complex subun
target_id: 3N7N_B
hhr_file: UPF260_0037.hhr
hit_full:
3N7N_B Monopolin complex subunit CSM1, Monopolin; meiosis, rDNA, REPLICATION; 3.9A {Saccharomyces cerevisiae}

target_description:
Monopolin complex subunit CSM1, Monopolin; meiosis, rDNA, REPLICATION; 3.9A {Saccharomyces cerevisiae}


upf_id: UPF260_0037
query: UPF260_0037|rep=M70|MAG26_contig548_gene_1478|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5KTB_A Monopolin complex subun
target_id: 5KTB_A
target_description: Monopolin complex subunit CSM1, Monopolin; monopolin, REPLICATION; 3.05A {Saccharomyces cerevisiae}
hhr_file: UPF260_0037.hhr
hit_full:
5KTB_A Monopolin complex subunit CSM1, Monopolin; monopolin, REPLICATION; 3.05A {Saccharomyces cerevisiae}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 1L8W_A VlsE1; Variable Surface
target_id: 1L8W_A
hhr_file: UPF260_0077.hhr
hit_full:
1L8W_A VlsE1; Variable Surface Protein, VMP-like sequence; HET: MSE; 2.3A {Borreliella burgdorferi} SCOP: a.154.1.1

target_description:
VlsE1; Variable Surface Protein, VMP-like sequence; HET: MSE; 2.3A {Borreliella burgdorferi} SCOP: a.154.1.1


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 1L8W_D VlsE1; Variable Surface
target_id: 1L8W_D
hhr_file: UPF260_0077.hhr
hit_full:
1L8W_D VlsE1; Variable Surface Protein, VMP-like sequence; HET: MSE; 2.3A {Borreliella burgdorferi} SCOP: a.154.1.1

target_description:
VlsE1; Variable Surface Protein, VMP-like sequence; HET: MSE; 2.3A {Borreliella burgdorferi} SCOP: a.154.1.1


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6IHK_A AMP-binding domain prot
target_id: 6IHK_A
hhr_file: UPF260_0077.hhr
hit_full:
6IHK_A AMP-binding domain protein; CoA ligase, ATP dependent, dimer; HET: ADP; 2.23A {Ruegeria lacuscaerulensis (strain DSM 11314 / KCTC 2953 / ITI-1157)}

target_description:
AMP-binding domain protein; CoA ligase, ATP dependent, dimer; HET: ADP; 2.23A {Ruegeria lacuscaerulensis (strain DSM 11314 / KCTC 2953 / ITI-1157)}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6YMX_U Cytochrome c oxidase su
target_id: 6YMX_U
hhr_file: UPF260_0077.hhr
hit_full:
6YMX_U Cytochrome c oxidase subunit 1; Complex, CIII, CIV, Supercomplex, ELECTRON; HET: 9PE, PCF, 6PH, HEM, PTY, HEA, UQ6, CN5, CN3, 7PH, 8PE; 3.17A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}

target_description:
Cytochrome c oxidase subunit 1; Complex, CIII, CIV, Supercomplex, ELECTRON; HET: 9PE, PCF, 6PH, HEM, PTY, HEA, UQ6, CN5, CN3, 7PH, 8PE; 3.17A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3NFG_L DNA-directed RNA polyme
target_id: 3NFG_L
hhr_file: UPF260_0077.hhr
hit_full:
3NFG_L DNA-directed RNA polymerase I subunit; triple barrel, transcription, RNA polymerase; HET: MSE; 2.51A {Candida glabrata}

target_description:
DNA-directed RNA polymerase I subunit; triple barrel, transcription, RNA polymerase; HET: MSE; 2.51A {Candida glabrata}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 1F3U_A TRANSCRIPTION INITIATIO
target_id: 1F3U_A
hhr_file: UPF260_0077.hhr
hit_full:
1F3U_A TRANSCRIPTION INITIATION FACTOR IIF, BETA; general transcription initiation and elongation; 1.7A {Homo sapiens} SCOP: b.65.1.1

target_description:
TRANSCRIPTION INITIATION FACTOR IIF, BETA; general transcription initiation and elongation; 1.7A {Homo sapiens} SCOP: b.65.1.1


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 4F6D_A Neural hemoglobin; oxyg
target_id: 4F6D_A
hhr_file: UPF260_0077.hhr
hit_full:
4F6D_A Neural hemoglobin; oxygen-storage, apolar tunnel, OXYGEN TRANSPORT; HET: HEM; 1.8A {Cerebratulus lacteus}

target_description:
Neural hemoglobin; oxygen-storage, apolar tunnel, OXYGEN TRANSPORT; HET: HEM; 1.8A {Cerebratulus lacteus}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 2IXD_A LMBE-RELATED PROTEIN; H
target_id: 2IXD_A
target_description: LMBE-RELATED PROTEIN; HEXAMER, DEACETYLASE, ROSSMANN FOLD, ZINC-DEPENDENT; 1.8A {BACILLUS CEREUS}
hhr_file: UPF260_0077.hhr
hit_full:
2IXD_A LMBE-RELATED PROTEIN; HEXAMER, DEACETYLASE, ROSSMANN FOLD, ZINC-DEPENDENT; 1.8A {BACILLUS CEREUS}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3TYP_B Uncharacterized protein
target_id: 3TYP_B
hhr_file: UPF260_0077.hhr
hit_full:
3TYP_B Uncharacterized protein; inorganic triphosphatase, HYDROLASE; HET: EDO; 1.9A {Nitrosomonas europaea}

target_description:
Uncharacterized protein; inorganic triphosphatase, HYDROLASE; HET: EDO; 1.9A {Nitrosomonas europaea}


upf_id: UPF260_0077
query: UPF260_0077|rep=M70|MAG38_contig403_gene_2192|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 4KQT_A Putative outer membrane
target_id: 4KQT_A
hhr_file: UPF260_0077.hhr
hit_full:
4KQT_A Putative outer membrane chaperone (OmpH-like); PF03938 family, Structural Genomics, Joint; HET: PGE, PEG, MSE; 2.83A {Caulobacter crescentus}

target_description:
Putative outer membrane chaperone (OmpH-like); PF03938 family, Structural Genomics, Joint; HET: PGE, PEG, MSE; 2.83A {Caulobacter crescentus}


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 4A14_A KINESIN-LIKE PROTEIN KI
target_id: 4A14_A
target_description: KINESIN-LIKE PROTEIN KIF7; MOTOR PROTEIN, KINESIN, MOTOR DOMAIN; HET: ADP; 1.6A {HOMO SAPIENS}
hhr_file: UPF260_0104.hhr
hit_full:
4A14_A KINESIN-LIKE PROTEIN KIF7; MOTOR PROTEIN, KINESIN, MOTOR DOMAIN; HET: ADP; 1.6A {HOMO SAPIENS}


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2GSL_F Hypothetical protein; a
target_id: 2GSL_F
hhr_file: UPF260_0104.hhr
hit_full:
2GSL_F Hypothetical protein; alpha-helical protein, Structural Genomics, PSI; HET: MSE; 2.6A {Fusobacterium nucleatum subsp. nucleatum}

target_description:
Hypothetical protein; alpha-helical protein, Structural Genomics, PSI; HET: MSE; 2.6A {Fusobacterium nucleatum subsp. nucleatum}


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 6D7K_H MmoX1, MmoY, MmoZ, MmoD
target_id: 6D7K_H
hhr_file: UPF260_0104.hhr
hit_full:
6D7K_H MmoX1, MmoY, MmoZ, MmoD; Complex, OXIDOREDUCTASE, oxidoreductase-inhibitor complex; HET: HEZ; 2.6A {Methylosinus sporium}

target_description:
MmoX1, MmoY, MmoZ, MmoD; Complex, OXIDOREDUCTASE, oxidoreductase-inhibitor complex; HET: HEZ; 2.6A {Methylosinus sporium}


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 1U61_A hypothetical protein; s
target_id: 1U61_A
hhr_file: UPF260_0104.hhr
hit_full:
1U61_A hypothetical protein; structural genomics, hypothetical protein, PSI; 2.15A {Bacillus cereus} SCOP: a.149.1.1

target_description:
hypothetical protein; structural genomics, hypothetical protein, PSI; 2.15A {Bacillus cereus} SCOP: a.149.1.1


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 6TNN_I 50S ribosomal protein L
target_id: 6TNN_I
hhr_file: UPF260_0104.hhr
hit_full:
6TNN_I 50S ribosomal protein L10, Mini-ribonuclease; Mini-RNase III, Mini-III, complex, ribosome; HET: MG; 3.07A {Bacillus subtilis subsp. subtilis str. 168 }

target_description:
50S ribosomal protein L10, Mini-ribonuclease; Mini-RNase III, Mini-III, complex, ribosome; HET: MG; 3.07A {Bacillus subtilis subsp. subtilis str. 168 }


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 6H7E_B cDNA FLJ56134, highly s
target_id: 6H7E_B
hhr_file: UPF260_0104.hhr
hit_full:
6H7E_B cDNA FLJ56134, highly similar to; GEF, cAMP, regulatory, Membrane binding; HET: CMP, SO4; 2.3A {Homo sapiens}

target_description:
cDNA FLJ56134, highly similar to; GEF, cAMP, regulatory, Membrane binding; HET: CMP, SO4; 2.3A {Homo sapiens}


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5WFB_A AP-4 complex accessory
target_id: 5WFB_A
hhr_file: UPF260_0104.hhr
hit_full:
5WFB_A AP-4 complex accessory subunit Tepsin; protein trafficking, PROTEIN TRANSPORT; 1.382A {Homo sapiens}

target_description:
AP-4 complex accessory subunit Tepsin; protein trafficking, PROTEIN TRANSPORT; 1.382A {Homo sapiens}


upf_id: UPF260_0104
query: UPF260_0104|rep=M70|MAG42_contig541_gene_1466|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5DFE_XY Ribosome; PROTEIN BIOS
target_id: 5DFE_XY
hhr_file: UPF260_0104.hhr
hit_full:
5DFE_XY Ribosome; PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, tRNA; HET: 5MU, 5MC, MG, SF4, 4OC, 2MU, 2MG, PSU, UR3, 2MA, 7MG, MA6, 0TD, ZN, M2G, OMG; 3.09997551079A {Escherichia coli}

target_description:
Ribosome; PROTEIN BIOSYNTHESIS, RIBOSOMES, RNA, tRNA; HET: 5MU, 5MC, MG, SF4, 4OC, 2MU, 2MG, PSU, UR3, 2MA, 7MG, MA6, 0TD, ZN, M2G, OMG; 3.09997551079A {Escherichia coli}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 2Y78_A PEPTIDYL-PROLYL CIS-TRA
target_id: 2Y78_A
hhr_file: UPF260_0148.hhr
hit_full:
2Y78_A PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (E.C.5.2.1.8); ISOMERASE, MIP, PPIASE, VIRULENCE; HET: SO4, GOL; 0.91A {BURKHOLDERIA PSEUDOMALLEI}

target_description:
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (E.C.5.2.1.8); ISOMERASE, MIP, PPIASE, VIRULENCE; HET: SO4, GOL; 0.91A {BURKHOLDERIA PSEUDOMALLEI}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6YWY_DD uL2m, uL3m, uL4m, uL5m
target_id: 6YWY_DD
hhr_file: UPF260_0148.hhr
hit_full:
6YWY_DD uL2m, uL3m, uL4m, uL5m, uL6m; Neurospora crassa, translating Mitoribosomes, tRNA; HET: K, SPM, MG, NAD, ATP;{Neurospora crassa}

target_description:
uL2m, uL3m, uL4m, uL5m, uL6m; Neurospora crassa, translating Mitoribosomes, tRNA; HET: K, SPM, MG, NAD, ATP;{Neurospora crassa}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5T59_A KLLA0F02343p, KLLA0E058
target_id: 5T59_A
hhr_file: UPF260_0148.hhr
hit_full:
5T59_A KLLA0F02343p, KLLA0E05809p, KLLA0B13629p; cell cycle, kinetochore, complex, chromosome; HET: NHE; 2.405A {Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)}

target_description:
KLLA0F02343p, KLLA0E05809p, KLLA0B13629p; cell cycle, kinetochore, complex, chromosome; HET: NHE; 2.405A {Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 5YZG_i Pre-mRNA-processing-spl
target_id: 5YZG_i
hhr_file: UPF260_0148.hhr
hit_full:
5YZG_i Pre-mRNA-processing-splicing factor 8, 116 kDa; Structure of a Human Catalytic; HET: ADP, GTP, IHP, SEP, ATP; 4.1A {Homo sapiens}

target_description:
Pre-mRNA-processing-splicing factor 8, 116 kDa; Structure of a Human Catalytic; HET: ADP, GTP, IHP, SEP, ATP; 4.1A {Homo sapiens}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 3IOZ_B Protein Nef, T-cell sur
target_id: 3IOZ_B
hhr_file: UPF260_0148.hhr
hit_full:
3IOZ_B Protein Nef, T-cell surface glycoprotein; Protein-Protein complex, Cell membrane, Lipoprotein; 3.699A {Simian immunodeficiency virus}

target_description:
Protein Nef, T-cell surface glycoprotein; Protein-Protein complex, Cell membrane, Lipoprotein; 3.699A {Simian immunodeficiency virus}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6ID1_b Pre-mRNA-processing-spl
target_id: 6ID1_b
hhr_file: UPF260_0148.hhr
hit_full:
6ID1_b Pre-mRNA-processing-splicing factor 8, 116 kDa; Human Intron Lariat Spliceosome, SPLICING; HET: GTP, IHP, SEP; 2.86A {Homo sapiens}

target_description:
Pre-mRNA-processing-splicing factor 8, 116 kDa; Human Intron Lariat Spliceosome, SPLICING; HET: GTP, IHP, SEP; 2.86A {Homo sapiens}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 6TF9_fP1 Helix 1, Belt helices
target_id: 6TF9_fP1
target_description: Helix 1, Belt helices 1,2,3,4; gamma-Tubulin Ring Complex, microtubule nucleation;{Xenopus laevis}
hhr_file: UPF260_0148.hhr
hit_full:
6TF9_fP1 Helix 1, Belt helices 1,2,3,4; gamma-Tubulin Ring Complex, microtubule nucleation;{Xenopus laevis}


upf_id: UPF260_0148
query: UPF260_0148|rep=M75|MAG14_contig86_gene_1122|size=2|mags=2|samples=1
database: PDB70_20220319
hit: 4WIP_A human Dvl2 DIX domain;
target_id: 4WIP_A
hhr_file: UPF260_0148.hhr
hit_full:
4WIP_A human Dvl2 DIX domain; polymer signaling ubiquitin-like, signaling protein; HET: 1PE; 2.691A {Homo sapiens}

target_description:
human Dvl2 DIX domain; polymer signaling ubiquitin-like, signaling protein; HET: 1PE; 2.691A {Homo sapiens}


upf_id: UPF260_0153
query: UPF260_0153|rep=M75|MAG37_contig46_gene_475|size=3|mags=3|samples=2
database: PDB70_20220319
hit: 4U3U_q0 40S ribosomal protein
target_id: 4U3U_q0
hhr_file: UPF260_0153.hhr
hit_full:
4U3U_q0 40S ribosomal protein S0-A, 40S; translation, ribosome, 40S, 60S, 80S; HET: 3HE, ZN, MG, OHX; 2.9A {Saccharomyces cerevisiae S288c}

target_description:
40S ribosomal protein S0-A, 40S; translation, ribosome, 40S, 60S, 80S; HET: 3HE, ZN, MG, OHX; 2.9A {Saccharomyces cerevisiae S288c}


upf_id: UPF260_0153
query: UPF260_0153|rep=M75|MAG37_contig46_gene_475|size=3|mags=3|samples=2
database: PDB70_20220319
hit: 5TBW_AN ?; Protein translation
target_id: 5TBW_AN
hhr_file: UPF260_0153.hhr
hit_full:
5TBW_AN ?; Protein translation inhibitor, complex, ribosome; HET: ZN, 7AL, MG, OHX; 3.0A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}

target_description:
?; Protein translation inhibitor, complex, ribosome; HET: ZN, 7AL, MG, OHX; 3.0A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}


upf_id: UPF260_0153
query: UPF260_0153|rep=M75|MAG37_contig46_gene_475|size=3|mags=3|samples=2
database: PDB70_20220319
hit: 6T4Q_Lm 40S ribosomal protein
target_id: 6T4Q_Lm
hhr_file: UPF260_0153.hhr
hit_full:
6T4Q_Lm 40S ribosomal protein S1-A, 40S; stalling dicodon codon pair, TRANSLATION; HET: MG; 2.6A {Saccharomyces cerevisiae}

target_description:
40S ribosomal protein S1-A, 40S; stalling dicodon codon pair, TRANSLATION; HET: MG; 2.6A {Saccharomyces cerevisiae}


upf_id: UPF260_0153
query: UPF260_0153|rep=M75|MAG37_contig46_gene_475|size=3|mags=3|samples=2
database: PDB70_20220319
hit: 1MWP_A AMYLOID A4 PROTEIN; HEP
target_id: 1MWP_A
target_description: AMYLOID A4 PROTEIN; HEPARIN BINDING, SUGAR BINDING PROTEIN; 1.8A {Homo sapiens} SCOP: d.170.2.1
hhr_file: UPF260_0153.hhr
hit_full:
1MWP_A AMYLOID A4 PROTEIN; HEPARIN BINDING, SUGAR BINDING PROTEIN; 1.8A {Homo sapiens} SCOP: d.170.2.1


upf_id: UPF260_0153
query: UPF260_0153|rep=M75|MAG37_contig46_gene_475|size=3|mags=3|samples=2
database: PDB70_20220319
hit: 2K4B_A Transcriptional regulat
target_id: 2K4B_A
hhr_file: UPF260_0153.hhr
hit_full:
2K4B_A Transcriptional regulator; DNA binding protein, Winged Helix; NMR {Lactococcus lactis subsp. lactis}

target_description:
Transcriptional regulator; DNA binding protein, Winged Helix; NMR {Lactococcus lactis subsp. lactis}


upf_id: UPF260_0170
query: UPF260_0170|rep=M75|MAG51_contig352_gene_1523|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2VXD_A NUCLEOPHOSMIN; CHROMOSO
target_id: 2VXD_A
target_description: NUCLEOPHOSMIN; CHROMOSOMAL REARRANGEMENT, NUCLEAR PROTEIN, PROTO-ONCOGENE; NMR {HOMO SAPIENS}
hhr_file: UPF260_0170.hhr
hit_full:
2VXD_A NUCLEOPHOSMIN; CHROMOSOMAL REARRANGEMENT, NUCLEAR PROTEIN, PROTO-ONCOGENE; NMR {HOMO SAPIENS}


upf_id: UPF260_0170
query: UPF260_0170|rep=M75|MAG51_contig352_gene_1523|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3OFF_A LDLR chaperone boca; me
target_id: 3OFF_A
hhr_file: UPF260_0170.hhr
hit_full:
3OFF_A LDLR chaperone boca; mesd, molecular chaperone, protein folding; HET: SO4, MSE; 2.002A {Drosophila melanogaster}

target_description:
LDLR chaperone boca; mesd, molecular chaperone, protein folding; HET: SO4, MSE; 2.002A {Drosophila melanogaster}


upf_id: UPF260_0170
query: UPF260_0170|rep=M75|MAG51_contig352_gene_1523|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2IQI_A Hypothetical protein XC
target_id: 2IQI_A
hhr_file: UPF260_0170.hhr
hit_full:
2IQI_A Hypothetical protein XCC0632; Structural genomics, hypothetical protein, PSI-2; 2.7A {Xanthomonas campestris pv. campestris} SCOP: c.51.6.2

target_description:
Hypothetical protein XCC0632; Structural genomics, hypothetical protein, PSI-2; 2.7A {Xanthomonas campestris pv. campestris} SCOP: c.51.6.2


upf_id: UPF260_0170
query: UPF260_0170|rep=M75|MAG51_contig352_gene_1523|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2IQI_F Hypothetical protein XC
target_id: 2IQI_F
hhr_file: UPF260_0170.hhr
hit_full:
2IQI_F Hypothetical protein XCC0632; Structural genomics, hypothetical protein, PSI-2; 2.7A {Xanthomonas campestris pv. campestris} SCOP: c.51.6.2

target_description:
Hypothetical protein XCC0632; Structural genomics, hypothetical protein, PSI-2; 2.7A {Xanthomonas campestris pv. campestris} SCOP: c.51.6.2


upf_id: UPF260_0170
query: UPF260_0170|rep=M75|MAG51_contig352_gene_1523|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 7K58_N outer-arm dynein, axone
target_id: 7K58_N
target_description: outer-arm dynein, axonemal dynein, microtubule; HET: ADP, ATP; 3.5A {Tetrahymena thermophila}
hhr_file: UPF260_0170.hhr
hit_full:
7K58_N outer-arm dynein, axonemal dynein, microtubule; HET: ADP, ATP; 3.5A {Tetrahymena thermophila}


upf_id: UPF260_0170
query: UPF260_0170|rep=M75|MAG51_contig352_gene_1523|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5OBW_A Chaperone protein DnaK;
target_id: 5OBW_A
hhr_file: UPF260_0170.hhr
hit_full:
5OBW_A Chaperone protein DnaK; Complex, co-factor, ATP hydrolysis, CHAPERONE; HET: ADP, SO4, GOL; 1.4A {Mycoplasma genitalium G37}

target_description:
Chaperone protein DnaK; Complex, co-factor, ATP hydrolysis, CHAPERONE; HET: ADP, SO4, GOL; 1.4A {Mycoplasma genitalium G37}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 6A6I_E Excision repair cross-c
target_id: 6A6I_E
hhr_file: UPF260_0180.hhr
hit_full:
6A6I_E Excision repair cross-complementing rodent repair; DNA repair, helicase, ubiquitin, molecular; HET: GOL; 2.6A {Homo sapiens}

target_description:
Excision repair cross-complementing rodent repair; DNA repair, helicase, ubiquitin, molecular; HET: GOL; 2.6A {Homo sapiens}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3HTU_E Vacuolar protein-sortin
target_id: 3HTU_E
hhr_file: UPF260_0180.hhr
hit_full:
3HTU_E Vacuolar protein-sorting-associated protein 25, Vacuolar; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB; 2.0A {Homo sapiens}

target_description:
Vacuolar protein-sorting-associated protein 25, Vacuolar; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB; 2.0A {Homo sapiens}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3O59_X DNA polymerase II large
target_id: 3O59_X
hhr_file: UPF260_0180.hhr
hit_full:
3O59_X DNA polymerase II large subunit; alpha helical structure, DNA POLYMERASE; HET: MSE; 2.2A {Pyrococcus horikoshii}

target_description:
DNA polymerase II large subunit; alpha helical structure, DNA POLYMERASE; HET: MSE; 2.2A {Pyrococcus horikoshii}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5GPY_B General transcription f
target_id: 5GPY_B
hhr_file: UPF260_0180.hhr
hit_full:
5GPY_B General transcription factor IIE subunit; general transcription factor, RNA Polymerase; 2.1A {Homo sapiens}

target_description:
General transcription factor IIE subunit; general transcription factor, RNA Polymerase; 2.1A {Homo sapiens}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 1LTQ_A Polynucleotide kinase,
target_id: 1LTQ_A
hhr_file: UPF260_0180.hhr
hit_full:
1LTQ_A Polynucleotide kinase, Adenosine-5'-diphosphate, Dimethyl sulfoxide; KINASE, PHOSPHATASE, ALPHA/BETA, P-LOOP, TRANSFERASE; HET: ADP, MSE; 2.33A {Enterobacteria phage T4} SCOP: c.37.1.1, c.108.1.9

target_description:
Polynucleotide kinase, Adenosine-5'-diphosphate, Dimethyl sulfoxide; KINASE, PHOSPHATASE, ALPHA/BETA, P-LOOP, TRANSFERASE; HET: ADP, MSE; 2.33A {Enterobacteria phage T4} SCOP: c.37.1.1, c.108.1.9


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2IA5_H Polynucleotide kinase (
target_id: 2IA5_H
hhr_file: UPF260_0180.hhr
hit_full:
2IA5_H Polynucleotide kinase (E.C.2.7.1.78); Polynucleotide Kinase Phosphatase Sulfate-Complex, TRANSFERASE; HET: ARS, SO4; 2.9A {Enterobacteria phage T4} SCOP: c.37.1.1, c.108.1.9

target_description:
Polynucleotide kinase (E.C.2.7.1.78); Polynucleotide Kinase Phosphatase Sulfate-Complex, TRANSFERASE; HET: ARS, SO4; 2.9A {Enterobacteria phage T4} SCOP: c.37.1.1, c.108.1.9


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5H1A_B IclR transcription fact
target_id: 5H1A_B
target_description: IclR transcription factor homolog; DNA-binding, TRANSCRIPTION REGULATOR; 2.1A {Microbacterium sp.}
hhr_file: UPF260_0180.hhr
hit_full:
5H1A_B IclR transcription factor homolog; DNA-binding, TRANSCRIPTION REGULATOR; 2.1A {Microbacterium sp.}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 7CUO_B Transcription factor; C
target_id: 7CUO_B
hhr_file: UPF260_0180.hhr
hit_full:
7CUO_B Transcription factor; Complex, GENE REGULATION; HET: SO4, PHB; 2.0A {Microbacterium hydrocarbonoxydans}

target_description:
Transcription factor; Complex, GENE REGULATION; HET: SO4, PHB; 2.0A {Microbacterium hydrocarbonoxydans}


upf_id: UPF260_0180
query: UPF260_0180|rep=M75|MAG51_contig352_gene_1545|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5FMF_S DNA REPAIR HELICASE RAD
target_id: 5FMF_S
hhr_file: UPF260_0180.hhr
hit_full:
5FMF_S DNA REPAIR HELICASE RAD25, SSL2; TRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE; 6.0A {SACCHAROMYCES CEREVISIAE}

target_description:
DNA REPAIR HELICASE RAD25, SSL2; TRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE; 6.0A {SACCHAROMYCES CEREVISIAE}


upf_id: UPF260_0187
query: UPF260_0187|rep=M75|MAG51_contig352_gene_1572|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5UUU_A Beta-adrenergic recepto
target_id: 5UUU_A
hhr_file: UPF260_0187.hhr
hit_full:
5UUU_A Beta-adrenergic receptor kinase 1 (E.C.2.7.11.15); Kinase, Inhibitor, Heart Failure, Transferase-Transferase; HET: SO4, MES, QRW; 2.7A {Homo sapiens}

target_description:
Beta-adrenergic receptor kinase 1 (E.C.2.7.11.15); Kinase, Inhibitor, Heart Failure, Transferase-Transferase; HET: SO4, MES, QRW; 2.7A {Homo sapiens}


upf_id: UPF260_0187
query: UPF260_0187|rep=M75|MAG51_contig352_gene_1572|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5UVC_A Beta-adrenergic recepto
target_id: 5UVC_A
hhr_file: UPF260_0187.hhr
hit_full:
5UVC_A Beta-adrenergic receptor kinase 1 (E.C.2.7.11.15); Kinase, Inhibitor, Heart Failure, TRANSFERASE-TRANSFERASE; HET: SO4, 8PV; 2.65A {Homo sapiens}

target_description:
Beta-adrenergic receptor kinase 1 (E.C.2.7.11.15); Kinase, Inhibitor, Heart Failure, TRANSFERASE-TRANSFERASE; HET: SO4, 8PV; 2.65A {Homo sapiens}


upf_id: UPF260_0187
query: UPF260_0187|rep=M75|MAG51_contig352_gene_1572|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 1LS4_A Helix-bundle, exchangea
target_id: 1LS4_A
target_description: Helix-bundle, exchangeable apolipoprotein, LIPID TRANSPORT; NMR {Locusta migratoria} SCOP: a.63.1.1
hhr_file: UPF260_0187.hhr
hit_full:
1LS4_A Helix-bundle, exchangeable apolipoprotein, LIPID TRANSPORT; NMR {Locusta migratoria} SCOP: a.63.1.1


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3K7C_A Putative NTF2-like tran
target_id: 3K7C_A
hhr_file: UPF260_0229.hhr
hit_full:
3K7C_A Putative NTF2-like transpeptidase; Putative NTF2-like transpeptidase, Structural Genomics; HET: PGE, PEG, MSE; 2.0A {Campylobacter jejuni}

target_description:
Putative NTF2-like transpeptidase; Putative NTF2-like transpeptidase, Structural Genomics; HET: PGE, PEG, MSE; 2.0A {Campylobacter jejuni}


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3FKA_B uncharacterized NTF-2 l
target_id: 3FKA_B
hhr_file: UPF260_0229.hhr
hit_full:
3FKA_B uncharacterized NTF-2 like protein; NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT; HET: UNL, ACT, EDO, MSE; 1.69A {Silicibacter pomeroyi DSS-3}

target_description:
uncharacterized NTF-2 like protein; NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT; HET: UNL, ACT, EDO, MSE; 1.69A {Silicibacter pomeroyi DSS-3}


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3FKA_D uncharacterized NTF-2 l
target_id: 3FKA_D
hhr_file: UPF260_0229.hhr
hit_full:
3FKA_D uncharacterized NTF-2 like protein; NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT; HET: UNL, ACT, EDO, MSE; 1.69A {Silicibacter pomeroyi DSS-3}

target_description:
uncharacterized NTF-2 like protein; NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT; HET: UNL, ACT, EDO, MSE; 1.69A {Silicibacter pomeroyi DSS-3}


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3DUK_D NTF2-like protein of un
target_id: 3DUK_D
hhr_file: UPF260_0229.hhr
hit_full:
3DUK_D NTF2-like protein of unknown function; NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT; HET: EDO, MSE; 2.2A {Methylobacillus flagellatus KT}

target_description:
NTF2-like protein of unknown function; NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT; HET: EDO, MSE; 2.2A {Methylobacillus flagellatus KT}


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3B7C_A Uncharacterized protein
target_id: 3B7C_A
hhr_file: UPF260_0229.hhr
hit_full:
3B7C_A Uncharacterized protein; NTF-2 LIKE PROTEIN, STRUCTURAL GENOMICS; HET: EDO, MSE; 1.7A {Shewanella oneidensis} SCOP: d.17.4.16

target_description:
Uncharacterized protein; NTF-2 LIKE PROTEIN, STRUCTURAL GENOMICS; HET: EDO, MSE; 1.7A {Shewanella oneidensis} SCOP: d.17.4.16


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5BKA_D Hydroxylacyl-CoA dehydr
target_id: 5BKA_D
hhr_file: UPF260_0229.hhr
hit_full:
5BKA_D Hydroxylacyl-CoA dehydrogenase; actinorhodin, benzoisochromaquinone, Oxidoreductase; HET: MSE; 2.11A {Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)}

target_description:
Hydroxylacyl-CoA dehydrogenase; actinorhodin, benzoisochromaquinone, Oxidoreductase; HET: MSE; 2.11A {Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)}


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5BKA_E Hydroxylacyl-CoA dehydr
target_id: 5BKA_E
hhr_file: UPF260_0229.hhr
hit_full:
5BKA_E Hydroxylacyl-CoA dehydrogenase; actinorhodin, benzoisochromaquinone, Oxidoreductase; HET: MSE; 2.11A {Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)}

target_description:
Hydroxylacyl-CoA dehydrogenase; actinorhodin, benzoisochromaquinone, Oxidoreductase; HET: MSE; 2.11A {Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)}


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 3EBY_A beta subunit of a putat
target_id: 3EBY_A
hhr_file: UPF260_0229.hhr
hit_full:
3EBY_A beta subunit of a putative; YP_001165631.1, the beta subunit of; HET: MSE; 1.75A {Novosphingobium aromaticivorans DSM 12444} SCOP: d.17.4.4

target_description:
beta subunit of a putative; YP_001165631.1, the beta subunit of; HET: MSE; 1.75A {Novosphingobium aromaticivorans DSM 12444} SCOP: d.17.4.4


upf_id: UPF260_0229
query: UPF260_0229|rep=M75|MAG51_contig678_gene_3051|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2RFR_A Uncharacterized protein
target_id: 2RFR_A
hhr_file: UPF260_0229.hhr
hit_full:
2RFR_A Uncharacterized protein; Structural genomics, Joint Center for; HET: MSE; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28

target_description:
Uncharacterized protein; Structural genomics, Joint Center for; HET: MSE; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 6AMA_G DNA binding domain-cont
target_id: 6AMA_G
hhr_file: UPF260_0236.hhr
hit_full:
6AMA_G DNA binding domain-containing protein, excisionase; BldC, S. coelicolor, developmental switch; 3.09A {Streptomyces venezuelae}

target_description:
DNA binding domain-containing protein, excisionase; BldC, S. coelicolor, developmental switch; 3.09A {Streptomyces venezuelae}


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 6AMA_Y DNA binding domain-cont
target_id: 6AMA_Y
hhr_file: UPF260_0236.hhr
hit_full:
6AMA_Y DNA binding domain-containing protein, excisionase; BldC, S. coelicolor, developmental switch; 3.09A {Streptomyces venezuelae}

target_description:
DNA binding domain-containing protein, excisionase; BldC, S. coelicolor, developmental switch; 3.09A {Streptomyces venezuelae}


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2M83_A Protein phosphatase 1 r
target_id: 2M83_A
hhr_file: UPF260_0236.hhr
hit_full:
2M83_A Protein phosphatase 1 regulatory subunit; protein, starch binding domain, carbohydrate; NMR {Oryctolagus cuniculus}

target_description:
Protein phosphatase 1 regulatory subunit; protein, starch binding domain, carbohydrate; NMR {Oryctolagus cuniculus}


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2BO3_A HYPOTHETICAL PROTEIN HP
target_id: 2BO3_A
hhr_file: UPF260_0236.hhr
hit_full:
2BO3_A HYPOTHETICAL PROTEIN HP0242; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, HELICOBACTER; 2.27A {HELICOBACTER PYLORI} SCOP: a.292.1.1

target_description:
HYPOTHETICAL PROTEIN HP0242; STRUCTURAL GENOMICS, UNKNOWN FUNCTION, HELICOBACTER; 2.27A {HELICOBACTER PYLORI} SCOP: a.292.1.1


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 4U12_A protein HP0242; Structu
target_id: 4U12_A
target_description: protein HP0242; Structural Genomics, PSI-2, Midwest Center; 1.94A {Helicobacter pylori 26695}
hhr_file: UPF260_0236.hhr
hit_full:
4U12_A protein HP0242; Structural Genomics, PSI-2, Midwest Center; 1.94A {Helicobacter pylori 26695}


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 2XVC_A ESCRT-III, CDVA, SSO091
target_id: 2XVC_A
target_description: ESCRT-III, CDVA, SSO0911; CELL CYCLE, CELL DIVISION, CYTOKINESIS; 2.15A {SULFOLOBUS SOLFATARICUS}
hhr_file: UPF260_0236.hhr
hit_full:
2XVC_A ESCRT-III, CDVA, SSO0911; CELL CYCLE, CELL DIVISION, CYTOKINESIS; 2.15A {SULFOLOBUS SOLFATARICUS}


upf_id: UPF260_0236
query: UPF260_0236|rep=M75|MAG6_contig12_gene_172|size=2|mags=2|samples=2
database: PDB70_20220319
hit: 5C39_B P0 Manganese cluster pe
target_id: 5C39_B
target_description: P0 Manganese cluster peptide; Manganese cofactors, Mn4Ca cluster, DE; 1.751A {synthetic construct}
hhr_file: UPF260_0236.hhr
hit_full:
5C39_B P0 Manganese cluster peptide; Manganese cofactors, Mn4Ca cluster, DE; 1.751A {synthetic construct}


# json_documents

name: catalog_metadata
payload:
{"background_fasta": "/home/siton02/disk_sdg/md0_backup_2026-04-28/crf/mm/M65_M70_M75_annotation_dark_UniRef50_ready_combined.faa", "background_fasta_sha256": "44ba434c30a20ffb99f838d2ba793ee9e23e0ef902906ade028dbc97cca9eb8f", "candidate_count": 260, "classification": "/home/siton02/disk_sdg/md0_backup_2026-04-28/crf/mm/uniref50_mmseqs2_25339_20260820/classification.tsv", "classification_sha256": "2b6932bbf69bf49450d43505660549467a1b1ae907235b7e7c52eeeaabdf0488", "cluster_tsv": "/home/siton02/disk_sdg/md0_backup_2026-04-28/crf/mm/upf260_pipeline_20260821/clustering_sensitivity/i30_c70/clusters_cluster.tsv", "cluster_tsv_sha256": "5b1b51ef676732b571ef3a37a54ba1e69c9b6254be8a5fed1419255e2589136d", "family_count": 237, "input_fasta": "/home/siton02/disk_sdg/md0_backup_2026-04-28/crf/mm/combined260_remote_plus_sequence_divergent_candidates.faa", "input_fasta_sha256": "3916c9cac1c629790bc9436d00ca18e05f9c3686071884cc007c2bd546169ed2", "multi_member_family_count": 21, "neighborhood_evidence_scope": "Observable candidate neighborhood only: same sample/MAG/contig records present in the 25,339-protein background FASTA within +/- gene-number window. This is not a complete genomic neighborhood without original GFF/full proteome coordinates.", "neighborhood_window_gene_numbers": 5, "priority_score": {"independent_MAGs": "3 * (unique_mags - 1)", "mixed_evidence": "1.0 if both partial/remote and divergent members", "novelty": "1.5 * divergent_fraction", "observable_context": "1.5 * fraction of members with any observed background neighbor", "recurrence": "4 * (family_size - 1)", "remote_bridge": "0.5 if any partial/remote member", "sample_groups": "2 * (unique_samples - 1)", "shared_context": "min(1.5, 0.5 * shared neighbor UniRef50 targets)"}, "selected_family_count": 15, "unique_sequence_count": 256, "upf_definition": {"evalue_max": 0.001, "method": "MMseqs2 easy-cluster set-cover", "minimum_bidirectional_coverage": 0.7, "minimum_sequence_identity": 0.3, "sensitivity": 7.5}}


name: classification_rules
payload:
{"cazy_rule": {"hhsearch_evalue_max": 0.001, "hhsearch_template_coverage_min": 0.35, "or_hhsearch_probability_min": 90.0, "strict_dbcan_hmmscan": true}, "classes": ["CAZyme-like", "other function-associated", "structurally unresolved"], "counts": {"CAZyme-like": 1, "other function-associated": 1, "structurally unresolved": 14}, "other_function_rule": {"aligned_columns_min": 50, "hhsearch_evalue_max": 0.001, "hhsearch_probability_min": 95.0, "informative_annotation_required": true, "max_query_or_template_coverage_min": 0.25, "or_informative_uniref": "E<=1e-10 and qcov>=0.50"}, "warning": "absence of a profile match is not evidence of absence of function"}


name: active_site_assessment
payload:
{"canonical_template_mapping": {"Asn92": "Asn460", "Asp179": "Asn571_substitution", "Gly62": "Gly409", "His182": "His574", "Ser10": "Ser365"}, "construct": "CE3_domain_350_597", "docking_status": "template-guided pocket QA permitted; native-substrate docking unresolved", "interpretation": "The SGNH oxyanion-hole residues and Ser-His geometry are retained, but the canonical CE3 Asp aligns to Asn571 and no acidic side chain directly contacts His574. Treat the model as a putative noncanonical Ser-His hydrolase/dyad until biochemical validation.", "nearest_acidic_residue": {"atom": "OE2", "construct_position": 15, "full_length_position": 364, "residue": "GLU"}, "nearest_acidic_sidechain_to_his574_angstrom": 7.563, "ser365_OG_to_his574_NE2_angstrom": 2.708, "upf_id": "UPF260_0002"}


name: md_gate_decision
payload:
{"decision": "do_not_start_production_complex_MD", "reason": "Neither ligand produced a pose within 2 Å of the structurally transferred reference. ACT is too small for an informative affinity ranking and BOG is a crystallographic pocket probe rather than a validated native substrate.", "required_before_MD": ["identify the native host-surface glycan or a justified acetylated oligosaccharide", "biochemically test whether the Asp-to-Asn CE3 active-site variant retains esterase activity", "obtain a reproducible catalytic pose or experimental ligand-bound constraint"], "summaries": [{"any_pose_below_2A": false, "best_template_recovery_affinity_kcal_mol": -2.194, "best_template_recovery_mode": 8, "best_template_recovery_rmsd_angstrom": 2.635, "ligand": "ACT", "top_affinity_kcal_mol": -2.695, "top_mode_template_rmsd_angstrom": 8.087}, {"any_pose_below_2A": false, "best_template_recovery_affinity_kcal_mol": -4.446, "best_template_recovery_mode": 17, "best_template_recovery_rmsd_angstrom": 5.167, "ligand": "BOG", "top_affinity_kcal_mol": -5.238, "top_mode_template_rmsd_angstrom": 9.178}]}


