{
  "run_id": "upf260_pipeline_20260821",
  "run_date": "2026-08-21",
  "input": {
    "path": "/home/siton02/disk_sdg/md0_backup_2026-04-28/crf/mm/combined260_remote_plus_sequence_divergent_candidates.faa",
    "sha256": "3916c9cac1c629790bc9436d00ca18e05f9c3686071884cc007c2bd546169ed2",
    "sequences": 260,
    "unique_sequences": 256
  },
  "default_clustering": {
    "software": "MMseqs2",
    "version": "16.747c6",
    "cluster_mode": "set-cover",
    "minimum_identity": 0.30,
    "minimum_bidirectional_coverage": 0.70,
    "maximum_evalue": 0.001,
    "sensitivity": 7.5,
    "families": 237
  },
  "profile_search": {
    "hhsearch_version": "3.3.0",
    "hmmer_version": "3.4",
    "databases": {
      "dbcan_hmm": {
        "release_scope": "downloaded 2026-08-21",
        "profiles": 875,
        "sha256": "396c791fb13defab152864d8046687ef03b492937ec6f9bbab008bc77cbaa7a5"
      },
      "dbcan_hhsuite": { "release": "dbCAN-fam V9", "hhm_profiles": 683 },
      "pfam_hhsuite": { "release": "Pfam-A 35.0", "archive_sha256": "fd09599e41b4e9eb3c0ace8b6939575e89bf220f8d74151a4b6c4372b65fb62b" },
      "pdb70_hhsuite": {
        "snapshot": "2022-03-19",
        "archive_sha256": "72001abc13b0801b0e6729e80d41945dd46f7c516e5cd0f1e0620b15b18e96f0",
        "a3m_verified_md5": "dde99b6f8f5482497402a26e48e08ff3"
      }
    }
  },
  "classification_counts": {
    "CAZyme-like": 1,
    "other function-associated": 1,
    "structurally unresolved": 14
  },
  "structure": {
    "method": "ColabFold 1.6.1 / AlphaFold2 pTM",
    "models": 3,
    "recycles": 3,
    "templates": true,
    "selected_construct": "UPF260_0002_CE3_domain_350_597",
    "selected_mean_plddt": 92.504,
    "selected_ptm": 0.904,
    "usalign_commit": "fa4376bd99fa17a123d05d7ea47cf6574c80d64f",
    "usalign_version": "20260819"
  },
  "docking": {
    "software": "AutoDock Vina",
    "version": "f458505-mod",
    "seed": 20260821,
    "exhaustiveness": 32,
    "num_modes": 20,
    "ligands": ["ACT", "BOG"],
    "md_gate": "do_not_start_production_complex_MD"
  },
  "result_database": {
    "path": "upf260_results.sqlite3",
    "sqlite_version": "3.45.3",
    "sha256": "6b0e83826b0b1ee696b7cfca3f1a7392ca7fae44409f9fd000594e1eac062b28",
    "integrity_check": "ok"
  }
}
